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"Naoshi Nishida"

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"Naoshi Nishida"

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  • Reply to correspondence on “Molecular classification of hepatocellular carcinoma based on zoned metabolic feature and oncogenic signaling pathway”
    Eun Ji Jang, Pil Soo Sung
    Clinical and Molecular Hepatology.2026; 32(1): e115.     CrossRef
  • Fluorine-18 Fluorodeoxyglucose Positron Emission Tomography: A Potential Imaging Biomarker for Predicting Response to Combination Immunotherapy in Hepatocellular Carcinoma
    Masatoshi Kudo
    Liver Cancer.2025; 14(5): 511.     CrossRef
  • 5,811 View
  • 39 Download
  • Crossref

Original Article

Molecular classification of hepatocellular carcinoma based on zoned metabolic feature and oncogenic signaling pathway
Tomoko Aoki, Naoshi Nishida, Yutaka Kurebayashi, Kazuko Sakai, Naoto Fujiwara, Masakatsu Tsurusaki, Kohei Hanaoka, Masahiro Morita, Hirokazu Chishina, Masahiro Takita, Satoru Hagiwara, Hiroshi Ida, Kazuomi Ueshima, Yasunori Minami, Atsushi Takebe, Takaaki Murase, Keiko Kamei, Takuya Nakai, Ippei Matsumoto, Kazuto Nishio, Masatoshi Kudo
Clin Mol Hepatol 2025;31(3):981-1002.
Published online March 11, 2025
DOI: https://doi.org/10.3350/cmh.2024.1088
Background/Aims
Previously, we advocated the importance of classifying hepatocellular carcinoma (HCC) based on physiological functions. This study aims to classify HCC by focusing on liver-intrinsic metabolism and glycolytic pathway in cancer cells.
Methods
Comprehensive RNA/DNA sequencing, immunohistochemistry, and radiological evaluations were performed on HCC tissues from the training cohort (n=136) and validated in 916 public samples. HCC was classified using hierarchical clustering and compared with previous molecular, histopathological, and hemodynamic classifications.
Results
Liver-specific metabolism and glycolysis are mutually exclusive and were divided into two major subclasses: The “rich metabolism” subclass (60.3%) is characterized by enhanced bile acid and fatty acid metabolism, wellto-moderate differentiation, microtrabecular or pseudoglandular pattern, and homogeneous arterial-phase hyperenhancement (APHE), corresponding to Hoshida S3 with favorable prognosis. In IL6-JAK-STAT3-high (25.0%) conditions, upregulated ALB expression, enhanced gluconeogenesis and urea cycle activity, and an inflammatorymicroenvironment are observed. Conversely, the Wnt/β-catenin-high environment (19.9%) features elevated GLUL, APOB and CYP3A4 expression, frequent CTNNB1 (D32–S37) mutations, and an immune-desert/excluded phenotype. The “glycolysis” subclass (39.7%), characterized by histopathological dedifferentiation and downregulated liver-specific metabolism, encompasses subclasses with PI3K/mTOR (20.6%) and NOTCH/TGF-β (19.1%) signaling. These often exhibit TP53 mutations, macrotrabecular massive or compact patterns, inhomogeneous/rim-APHE, and high expression of hypoxia-inducible factors and glucose transporters, corresponding to Hoshida S1/2 with poor prognosis.
Conclusions
The loss of liver-specific metabolism correlates with morphological dedifferentiation, indicating cellular dedifferentiation may exhibit both physiological and pathological duality. Key signaling pathways involved in the maturation process from fetal to adult liver and zonation program may play a critical role in defining HCC diversity.

Citations

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  • Correspondence to editorial on “Molecular classification of hepatocellular carcinoma based on zoned metabolic feature and oncogenic signaling pathway”
    Tomoko Aoki, Naoshi Nishida, Masatoshi Kudo
    Clinical and Molecular Hepatology.2026; 32(1): e79.     CrossRef
  • Molecular stratification of hepatocellular carcinoma by metabolic-signaling pathways guides precision immunotherapy and TACE therapy
    Binghua Li, Yanchao Xu, Yican Zhu, Yukun Zhang, Zijie Wu, Tianci Luo, Laizhu Zhang, Weiwei Hu, Decai Yu
    Clinical and Molecular Hepatology.2026; 32(1): e16.     CrossRef
  • Reply to correspondence on “Molecular classification of hepatocellular carcinoma based on zoned metabolic feature and oncogenic signaling pathway”
    Eun Ji Jang, Pil Soo Sung
    Clinical and Molecular Hepatology.2026; 32(1): e115.     CrossRef
  • A novel link between tumor cell metabolism and patient prognosis: Editorial on “Molecular classification of hepatocellular carcinoma based on zoned metabolic feature and oncogenic signaling pathway”
    Eun Ji Jang, Pil Soo Sung
    Clinical and Molecular Hepatology.2026; 32(1): 420.     CrossRef
  • Zonation, Zonation, Zonation: The Real Estate of the Liver
    Tyler M. Yasaka, Chang Kyung Kim, Vik Meadows, Satdarshan P. Monga
    Annual Review of Pathology: Mechanisms of Disease .2026; 21(1): 185.     CrossRef
  • Single-cell RNA sequencing and spatial transcriptomic analysis reveal a distinct population of G6PD+ cells with aberrant bile acid metabolism in hepatocellular carcinoma
    Xing Jiang, Haiyan Quan, Ting Yin, Hailun Yao, Yajun Li, Bin Peng, Xinye Yuan, Weiguang Zeng, Honghui Chen, Rong Li
    Frontiers in Immunology.2026;[Epub]     CrossRef
  • Overexpression of S100 Calcium-Binding Protein A2 is Associated With Poor Prognosis in Hepatocellular Carcinoma
    Xiaopeng Chen, Shaoqing Ma, Wenlong Zeng, Chuiguo Huang, Jianyang Guo
    Cancer Control.2026;[Epub]     CrossRef
  • Correspondence to letter to the editor on “Molecular classification of hepatocellular carcinoma based on zoned metabolic feature and oncogenic signaling pathway”
    Tomoko Aoki, Naoshi Nishida, Masatoshi Kudo
    Clinical and Molecular Hepatology.2026; 32(2): e241.     CrossRef
  • Critical flaws in the molecular classification of HCC based on metabolic zonation: Letter to the editor on “Molecular classification of hepatocellular carcinoma based on zoned metabolic feature and oncogenic signaling pathway”
    Yongzhi Xie, Xiangyu Zhu, Qi Liang
    Clinical and Molecular Hepatology.2026; 32(2): e144.     CrossRef
  • Clinical applications of immunogenomics in hepatocellular carcinoma
    James K. Carter, Daniel C. Cameron, Augusto Villanueva
    Clinical and Molecular Hepatology.2026; 32(2): 511.     CrossRef
  • Unveiling the Intricate Dance: Signaling Pathways in Liver Cancer Metabolism and Immunity
    Yichi Xu, Bo Wen, Dai Zhang, Fangxin Tang, Shu Liu
    Current Oncology Reports.2026;[Epub]     CrossRef
  • Clinical Prediction of Glycolysis-Driven Molecular Subclass of Hepatocellular Carcinoma without Transcriptomic Profiling
    Tomoko Aoki, Masatoshi Kudo, Satoshi Ogiso, Genki Okumura, Megumi Hoshino, Yuka Nakamura, Ryo Morisue, Shohei Koyama, Naoshi Nishida, Kohei Hanaoka, Kazuko Sakai, Yutaka Kurebayashi, Masakatsu Tsurusaki, Masahiro Morita, Atsushi Takebe, Takaaki Murase, Ke
    Liver Cancer.2026; : 1.     CrossRef
  • Integrative Profiling of Metabolic CYP Expression, DNA Mutation Rates, and Immune Cell Infiltration for Survival Prognosis in Hepatocellular Carcinoma
    Mona Dawood, Axel Guthart, Ednah Ooko, Ralf Weiskirchen, Thomas Efferth, Joelle C. Boulos
    Livers.2026; 6(3): 50.     CrossRef
  • Metabolic Reprogramming at the Tumor–Immune Interface in Hepatocellular Carcinoma
    Weiming Zhao, Ping Li
    Cells.2026; 15(15): 1357.     CrossRef
  • Fluorine-18 Fluorodeoxyglucose Positron Emission Tomography: A Potential Imaging Biomarker for Predicting Response to Combination Immunotherapy in Hepatocellular Carcinoma
    Masatoshi Kudo
    Liver Cancer.2025; 14(5): 511.     CrossRef
  • 15,236 View
  • 368 Download
  • 17 Web of Science
  • Crossref
Editorials

Hepatic neoplasm

Citations

Citations to this article as recorded by  Crossref logo
  • Distinct tumor immune microenvironment modulation by anti-PD-1/PD-L1, VEGF, and CTLA-4 blockade provides a rationale for triplet therapy in hepatocellular carcinoma
    Hideki Iwamoto, Hironori Koga, Takumi Kawaguchi
    Clinical and Molecular Hepatology.2026; 32(1): e38.     CrossRef
  • Correspondence to editorial on “Integrated molecular characterization of sarcomatoid hepatocellular carcinoma”
    Rong-Qi Sun, Shao-Lai Zhou
    Clinical and Molecular Hepatology.2025; 31(2): e192.     CrossRef
  • Curative response to combined targeted-immunotherapy for post-hepatectomy lymph node metastasis in sarcomatoid hepatocellular carcinoma: case report and literature review
    Pan Liu, Song Zhang, Xiao-Ming Xin, Min Jing, Lie-Dong Wen, Xin Xiang, Shun-Hai Liu
    Frontiers in Oncology.2025;[Epub]     CrossRef
  • 8,072 View
  • 42 Download
  • 3 Web of Science
  • Crossref

Hepatic neoplasm

Citations

Citations to this article as recorded by  Crossref logo
  • Distinct tumor immune microenvironment modulation by anti-PD-1/PD-L1, VEGF, and CTLA-4 blockade provides a rationale for triplet therapy in hepatocellular carcinoma
    Hideki Iwamoto, Hironori Koga, Takumi Kawaguchi
    Clinical and Molecular Hepatology.2026; 32(1): e38.     CrossRef
  • Correspondence to editorial 2 on “Genomic biomarkers to predict response to atezolizumab plus bevacizumab immunotherapy in hepatocellular carcinoma: insights from the IMbrave150 trial”
    Sun Young Yim, Sung Hwan Lee, Ji Hoon Kim, Sunyoung S Lee, Ahmed O Kaseb, Ju-Seog Lee
    Clinical and Molecular Hepatology.2025; 31(1): e84.     CrossRef
  • T lymphocyte-based immune response and therapy in hepatocellular carcinoma: focus on TILs and CAR-T cells
    Thikra Majid Muhammed, Saade Abdalkareem Jasim, Ahmed Hussein Zwamel, Safia Obaidur Rab, Suhas Ballal, Abhayveer Singh, Anima Nanda, Subhashree Ray, Ahmed Hjazi, Hatif Abdulrazaq Yasin
    Naunyn-Schmiedeberg's Archives of Pharmacology.2025; 398(8): 10007.     CrossRef
  • Genetic insights into sarcomatoid hepatocellular carcinoma: Critical role of ARID2 in pathogenesis and immune feature: Editorial on “Integrated molecular characterization of sarcomatoid hepatocellular carcinoma”
    Naoshi Nishida
    Clinical and Molecular Hepatology.2025; 31(2): 635.     CrossRef
  • Addressing the Complexities of Pre-Liver Transplant Immune Checkpoint Inhibitors for Hepatocellular Carcinoma: A Response to Recent Commentaries
    Mohammad Saeid Rezaee-Zavareh, Zhiyong Guo, Ju Dong Yang
    Journal of Hepatology.2024;[Epub]     CrossRef
  • 9,276 View
  • 96 Download
  • 4 Web of Science
  • Crossref

Hepatic neoplasm

Citations

Citations to this article as recorded by  Crossref logo
  • Distinct tumor immune microenvironment modulation by anti-PD-1/PD-L1, VEGF, and CTLA-4 blockade provides a rationale for triplet therapy in hepatocellular carcinoma
    Hideki Iwamoto, Hironori Koga, Takumi Kawaguchi
    Clinical and Molecular Hepatology.2026; 32(1): e38.     CrossRef
  • Second-Line and Subsequent Therapies after Atezolizumab Plus Bevacizumab Treatment in Hepatocellular Carcinoma: A Multicenter Prospective Cohort Study
    Yuri Cho, Jeong-Hoon Lee, Baek-Yeol Ryoo, Ho Yeong Lim, Dong Eun Lee, Bo Hyun Kim, Joong-Won Park
    Gut and Liver.2026; 20(4): 624.     CrossRef
  • Correspondence to editorial on “Sorafenib vs. Lenvatinib in advanced hepatocellular carcinoma after atezolizumab/bevacizumab failure: A real-world study”
    Young Eun Chon, Dong Yun Kim, Hong Jae Chon, Do Young Kim
    Clinical and Molecular Hepatology.2024; 30(4): 1005.     CrossRef
  • 9,280 View
  • 122 Download
  • 3 Web of Science
  • Crossref

Hepatic neoplasm

Metabolic disease as a risk of hepatocellular carcinoma
Naoshi Nishida
Clin Mol Hepatol 2021;27(1):87-90.
Published online December 3, 2020
DOI: https://doi.org/10.3350/cmh.2020.0302

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    Dalia E. Sherief, Hadeer Hamdy Shehata, Nahla Nosair, Amira A. A. Othman, Mohamed W. Saleh, Emad Sadaka, Rasha Elgamal
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    Cancers.2025; 17(4): 566.     CrossRef
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    Cancers.2025; 17(5): 844.     CrossRef
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    Korean Journal of Geriatrics & Gerontology.2025; 26(3): 147.     CrossRef
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    Cells.2024; 13(7): 638.     CrossRef
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    Reproductive Health.2024;[Epub]     CrossRef
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    Cureus.2024;[Epub]     CrossRef
  • Reply to correspondence on “Metformin and statins reduce hepatocellular carcinoma risk in chronic hepatitis C patients with failed antiviral therapy”
    Seren M. Gedallovich, Paul Y. Kwo
    Clinical and Molecular Hepatology.2024; 30(4): 1050.     CrossRef
  • The emerging age-pattern changes of patients with hepatocellular carcinoma in Korea
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    Clinical and Molecular Hepatology.2023; 29(1): 99.     CrossRef
  • Global burden of primary liver cancer and its association with underlying aetiologies, sociodemographic status, and sex differences from 1990–2019: A DALY-based analysis of the Global Burden of Disease 2019 study
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    Korean Journal of Clinical Geriatrics.2023; 24(1): 41.     CrossRef
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  • 129 Download
  • 22 Web of Science
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Hepatic neoplasm

Long-term prognosis and management of hepatocellular carcinoma after curative treatment
Naoshi Nishida
Clin Mol Hepatol 2020;26(4):480-483.
Published online September 21, 2020
DOI: https://doi.org/10.3350/cmh.2020.0208

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  • Circulating tumour DNA for a minimal residual disease assessment and recurrence risk in hepatocellular carcinoma: a systematic review and meta-analysis
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  • 10,133 View
  • 111 Download
  • 19 Web of Science
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