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"Yang Liu"

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"Yang Liu"

Original Article

Fibrosis-4plus score: a novel machine learning-based tool for screening high-risk varices in compensated cirrhosis (CHESS2004): an international multicenter study
Bingtian Dong, Ruiling He, Shenghong Ju, Yuping Chen, Ivica Grgurevic, Jianzhong Ma, Ying Guo, Huizhen Fan, Qiang Yan, Chuan Liu, Huixiong Xu, Anita Madir, Kristian Podrug, Jia Wang, Linxue Qian, Zhengzi Geng, Shanghao Liu, Tao Ren, Guo Zhang, Kun Wang, Meiqin Su, Fei Chen, Sumei Ma, Liting Zhang, Zhaowei Tong, Yonghe Zhou, Xin Li, Fanbin He, Hui Huan, Wenjuan Wang, Yunxiao Liang, Juan Tang, Fang Ai, Tingyu Wang, Liyun Zheng, Zhongwei Zhao, Jiansong Ji, Wei Liu, Jiaojiao Xu, Bo Liu, Xuemei Wang, Yao Zhang, Qiong Yan, Hui Liu, Xiaomei Chen, Shuhua Zhang, Yihua Wang, Yang Liu, Li Yin, Yanni Liu, Yanqing Huang, Li Bian, Ping An, Xin Zhang, Shaoting Zhang, Jinhua Shao, Xiangman Zhang, Wei Rao, Chaoxue Zhang, Christoph Frank Dietrich, Won Kim, Xiaolong Qi
Clin Mol Hepatol 2025;31(3):881-898.
Published online February 5, 2025
DOI: https://doi.org/10.3350/cmh.2024.0898
Background/Aims
A large percentage of patients undergoing esophagogastroduodenoscopy (EGD) screening do not have esophageal varices (EV) or have only small EV. We evaluated a large, international, multicenter cohort to develop a novel score, termed FIB-4plus, by combining the fibrosis-4 (FIB-4) score, liver stiffness measurement (LSM), and spleen stiffness measurement (SSM) to identify high-risk EV (HRV) in compensated cirrhosis.
Methods
This international cohort study involved patients with compensated cirrhosis from 17 Chinese hospitals and one Croatian institution (NCT04546360). Two-dimensional shear wave elastography-derived LSM and SSM values, and components of the FIB-4 score (i.e., age, aspartate aminotransferase, alanine aminotransferase, and platelet count [PLT]) were combined using machine learning algorithms (logistic regression [LR] and extreme gradient boosting [XGBoost]) to develop the LR-FIB-4plus and XGBoost-FIB-4plus models, respectively. Shapley Additive exPlanations method was used to interpret the model predictions.
Results
We analyzed data from 502 patients with compensated cirrhosis who underwent EGD screening. The XGBoost-FIB-4plus score demonstrated superior predictive performance for HRV, with an area under the receiver operating characteristic curve (AUROC) of 0.927 (95% confidence interval [CI] 0.897–0.957) in the training cohort (n=268), and 0.919 (95% CI 0.843–0.995) and 0.902 (95% CI 0.820–0.984) in the first (n=118) and second (n=82) external validation cohorts, respectively. Additionally, the XGBoost-FIB-4plus score exhibited high AUROC values for predicting EV across all cohorts. The FIB-4plus score outperformed the individual parameters (LSM, SSM, PLT, and FIB-4).
Conclusions
The FIB-4plus score effectively predicted EV and HRV in patients with compensated cirrhosis, providing clinicians with a valuable tool for optimizing patient management and outcomes.

Citations

Citations to this article as recorded by  Crossref logo
  • The evolution of non-invasive strategies in cirrhosis management—from screening to precision monitoring: Editorial on “Fibrosis-4plus score: a novel machine learning-based tool for screening high-risk varices in compensated cirrhosis (CHESS2004): an inter
    Haiyu Wang, Jinjun Chen
    Clinical and Molecular Hepatology.2026; 32(1): 403.     CrossRef
  • Relative change rate of liver stiffness measurements predicts the risk of liver decompensation in compensated advanced chronic liver disease
    Yanqiu Li, Zihang Qiao, Jinze Li, Bingbing Zhu, Yu Lu, Ying Feng, Xianbo Wang
    Clinical and Experimental Medicine.2025;[Epub]     CrossRef
  • Artificial Intelligence Applications in the Diagnosis and Management of Cirrhosis and Portal Hypertension: A Narrative Review
    Amrit Khooblall, Satish E. Viswanath, Layth Khawaja, Sameer Gadani
    Techniques in Vascular and Interventional Radiology.2025; 28(4): 101078.     CrossRef
  • Liver stiffness measurement-based risk score for predicting liver decompensation risk: a single-center retrospective Chinese study
    Yanqiu Li, Zihang Qiao, Jinze Li, Yongqi Li, Ying Feng, Xianbo Wang
    Clinical and Experimental Medicine.2025;[Epub]     CrossRef
  • Metabolomics and metabolites in cancer diagnosis and treatment
    Minyi Cai, Haiyan Liu, Chen Shao, Tingting Li, Jun Jin, Yahui Liang, Jinhu Wang, Ji Cao, Bo Yang, Qiaojun He, Xuejing Shao, Meidan Ying
    Molecular Biomedicine.2025;[Epub]     CrossRef
  • 11,688 View
  • 271 Download
  • 4 Web of Science
  • Crossref

Correspondence

Hepatic neoplasm

Citations

Citations to this article as recorded by  Crossref logo
  • Reply to correspondence on “Aberrant fragmentomic features of circulating cell-free mitochondrial DNA enable early detection and prognosis prediction of hepatocellular carcinoma”
    Hyuk Soo Eun
    Clinical and Molecular Hepatology.2025; 31(2): e215.     CrossRef
  • 5,662 View
  • 38 Download
  • 1 Web of Science
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Original Articles

Hepatic neoplasm

Aberrant fragmentomic features of circulating cell-free mitochondrial DNA enable early detection and prognosis prediction of hepatocellular carcinoma
Yang Liu, Fan Peng, Siyuan Wang, Huanmin Jiao, Kaixiang Zhou, Wenjie Guo, Shanshan Guo, Miao Dang, Huanqin Zhang, Weizheng Zhou, Xu Guo, Jinliang Xing
Clin Mol Hepatol 2025;31(1):196-212.
Published online October 15, 2024
DOI: https://doi.org/10.3350/cmh.2024.0527
Background/Aims
Early detection and effective prognosis prediction in patients with hepatocellular carcinoma (HCC) provide an avenue for survival improvement, yet more effective approaches are greatly needed. We sought to develop the detection and prognosis models with ultra-sensitivity and low cost based on fragmentomic features of circulating cell free mtDNA (ccf-mtDNA).
Methods
Capture-based mtDNA sequencing was carried out in plasma cell-free DNA samples from 1168 participants, including 571 patients with HCC, 301 patients with chronic hepatitis B or liver cirrhosis (CHB/LC) and 296 healthy controls (HC).
Results
The systematic analysis revealed significantly aberrant fragmentomic features of ccf-mtDNA in HCC group when compared with CHB/LC and HC groups. Moreover, we constructed a random forest algorithm-based HCC detection model by utilizing ccf-mtDNA fragmentomic features. Both internal and two external validation cohorts demonstrated the excellent capacity of our model in distinguishing early HCC patients from HC and highrisk population with CHB/LC, with AUC exceeding 0.983 and 0.981, sensitivity over 89.6% and 89.61%, and specificity over 98.20% and 95.00%, respectively, greatly surpassing the performance of alpha-fetoprotein (AFP) and mtDNA copy number. We also developed an HCC prognosis prediction model by LASSO-Cox regression to select 20 fragmentomic features, which exhibited exceptional ability in predicting 1-year, 2-year and 3-year survival (AUC=0.8333, 0.8145 and 0.7958 for validation cohort, respectively).
Conclusions
We have developed and validated a high-performing and low-cost approach in a large clinical cohort based on aberrant ccf-mtDNA fragmentomic features with promising clinical translational application for the early detection and prognosis prediction of HCC patients.

Citations

Citations to this article as recorded by  Crossref logo
  • Integrative metabolomic and transcriptomic profiling reveals distinct metabolic signatures of hepatocellular carcinoma arising from cirrhosis
    Junxi Ni, Qiuming Song, Daoli Liu, Yongwei Zhang, Yun Sun
    Computational Biology and Chemistry.2026; 121: 108863.     CrossRef
  • Transcriptome combined with single-cell sequencing explored prognostic markers associated with T cell exhaustion characteristics in head and neck squamous carcinoma
    Jie Liu, Penghui Li, Yuanyuan Zhang, Lian Zheng
    Scientific Reports.2025;[Epub]     CrossRef
  • Hepatocyte mitochondrial DNA activated store-operated Ca2+ entry via Stim1/Orai1-induced podocyte injury in trichloroethylene sensitized mice: A new insight in liver and kidney crosstalk
    Luo-lun Dong, Xue-qian Jia, Hai-bo Xie, Li-fu Zhu, Peng-cheng Zhou, Rui-xuan Cheng, Chun-lin Cao, Qi-xing Zhu, Jia-xiang Zhang
    Toxicology and Applied Pharmacology.2025; 503: 117465.     CrossRef
  • Mitochondrial metabolism and cancer therapeutic innovation
    Hongxiang Du, Tianhan Xu, Sihui Yu, Sufang Wu, Jiawen Zhang
    Signal Transduction and Targeted Therapy.2025;[Epub]     CrossRef
  • Mitochondrial echoes in the bloodstream: decoding ccf-mtDNA for the early detection and prognosis of hepatocellular carcinoma
    Yu-De Chu, Wei-Ting Chen, Wey-Ran Lin, Ming-Wei Lai, Chau-Ting Yeh
    Cell & Bioscience.2025;[Epub]     CrossRef
  • Circulating Cell‐Free Mitochondrial DNA as a Prognostic Biomarker in Patients With HBV‐Related Acute‐on‐Chronic Liver Failure
    Qiankun Hu, Jiajia Han, Chong Chen, Shuai Tao, Chenlu Huang, Jiacheng Lin, Xun Qi, Zhiping Qian, Mengxin Lu, Xinyan Li, Yi Zhang, Xuhua Jiang, Jianming Zheng, Huazhen Zhao, Feifei Yang, Jiming Zhang, Liang Chen, Xiaoni Kong, Xueyun Zhang, Yuxian Huang
    Journal of Medical Virology.2025;[Epub]     CrossRef
  • Mitochondrial damage-associated molecular patterns (mito-DAMPs): Determinants of hepatopathy progression and therapeutic implications
    Ranyi Luo, Yun Yang, Yinhao Zhang, Xiaoyong Xue, Mengyu Guo, Xiaojiaoyang Li
    Pharmacological Research.2025; 221: 107980.     CrossRef
  • Targeting liver cancer stem cells: the prognostic significance of MRPL17 in immunotherapy response
    Jingjing Shao, Tianye Zhao, Jibin Liu, Peipei Kang
    Frontiers in Immunology.2024;[Epub]     CrossRef
  • 7,012 View
  • 221 Download
  • 11 Web of Science
  • Crossref
Gut-derived lipopolysaccharide promotes alcoholic hepatosteatosis and subsequent hepatocellular carcinoma by stimulating neutrophil extracellular traps through toll-like receptor 4
Yang Liu, Xin Zhang, Shuo Chen, Jiazhong Wang, Shuo Yu, Yiming Li, Meng Xu, Harouna Aboubacar, Junhui Li, Tao Shan, Jixin Wang, Gang Cao
Clin Mol Hepatol 2022;28(3):522-539.
Published online May 4, 2022
DOI: https://doi.org/10.3350/cmh.2022.0039
Background/Aims
Binge drinking leads to many disorders, including alcoholic hepatosteatosis, which is characterized by intrahepatic neutrophil infiltration and increases the risk of hepatocellular carcinoma (HCC). Molecular mechanisms may involve the migration of bacterial metabolites from the gut to the liver and the activation of neutrophil extracellular traps (NETs).
Methods
Serum samples from both binge drinking and alcohol-avoiding patients were analyzed. Mouse models of chronic plus binge alcohol-induced hepatosteatosis and HCC models were used.
Results
A marker of NETs formation, lipopolysaccharide (LPS), was significantly higher in alcoholic hepatosteatosis and HCC patients and mice than in controls. Intrahepatic inflammation markers and HCC-related cytokines were decreased in mice with reduced NET formation due to neutrophil elastase (NE) deletion, and liver-related symptoms of alcohol were also alleviated in NE knockout mice. Removal of intestinal bacteria with antibiotics led to decreases in markers of NETs formation and inflammatory cytokines upon chronic alcohol consumption, and development of alcoholic hepatosteatosis and HCC was also attenuated. These functions were restored upon supplementation with the bacterial product LPS. When mice lacking toll-like receptor 4 (TLR4) received chronic alcohol feeding, intrahepatic markers of NETs formation decreased, and hepatosteatosis and HCC were alleviated.
Conclusions
Formation of NETs following LPS stimulation of TLR4 upon chronic alcohol use leads to increased alcoholic steatosis and subsequent HCC.

Citations

Citations to this article as recorded by  Crossref logo
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    Ki M. Mak, Aditya C. Shekhar, Selena Y. Ding
    The Anatomical Record.2026; 309(1): 214.     CrossRef
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    The International Journal of Biochemistry & Cell Biology.2026; 190: 106873.     CrossRef
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    Ki M. Mak, Aditya C. Shekhar
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  • 41 Web of Science
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